PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g006240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 1300aa    MW: 145568 Da    PI: 7.8198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g006240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003312111234223
                      EET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                      +C+   Cgk F+ + +L+ H+r+H
  Csa13g006240.1 1211 RCTheGCGKKFRAHKYLVLHQRVH 1234
                      588889****************99 PP

2zf-C2H211.20.001112701296123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      ykC+   Cg sF+  s++ rH r+  H
  Csa13g006240.1 1270 YKCKveECGLSFRFVSDYSRHRRKtgH 1296
                      99*********************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-151555IPR003349JmjN domain
PROSITE profilePS5118314.161657IPR003349JmjN domain
PfamPF023757.1E-161750IPR003349JmjN domain
SMARTSM005583.0E-27262424IPR003347JmjC domain
PROSITE profilePS5118426.521262424IPR003347JmjC domain
SuperFamilySSF511976.32E-19273397No hitNo description
PfamPF023731.8E-31292397IPR003347JmjC domain
SMARTSM003555511871209IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.46412101239IPR007087Zinc finger, C2H2
SMARTSM003550.05712101234IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-812111239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.21E-712111243No hitNo description
PROSITE patternPS00028012121234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-1012401264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02112401264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.11312401269IPR007087Zinc finger, C2H2
PROSITE patternPS00028012421264IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-1012501292No hitNo description
Gene3DG3DSA:3.30.160.604.7E-1012651293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.812701296IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9312701299IPR007087Zinc finger, C2H2
PROSITE patternPS00028012721296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1300 aa     Download sequence    Send to blast
MGNVEIPNWL KALPLAPVFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV  60
FHNLNKSLLK CPELVSDVDI SKVWKEDRAV FTTRQQELGQ TVKKSKGEKS KCVSQRSGVK  120
QVWQSGGVYT LEQFEAKSKT FYKSQLGTVK EVSPVVVEAL FWKAASEKPI YIEYANDVPG  180
SAFGEPEGHF RHFRHRKRRG RGFYQRKTEI NGPSGKNSGN SSPMVEKAPL ASTSLSSQGS  240
SKQKSTDILD EMEGTAGWKL SNSSWNLQTI ARSPGSVTRF MPDDIPGVTS PMVYIGMLFS  300
WFAWHVEDHE LHSMNYLHTG SPKTWYAVPC DYALEFEEVI RKNSYGRNID QLAALTQLGE  360
KTTLVSPEMI VASGIPCCRL VQNPGEFVVT FPRSYHWLNV AKEAAVRRAA MNYLPMLSHQ  420
QLLYLLTIVP RSFLPGGRSS RLRDRQREER EFLVKKAFVE DILNENKNLS ALLREPSSRL  480
VMWDPDSLPR HTALALAAVG GAVSPPAVAK NEPEEVENKE KTTLLEELSL FMEKLNDVYY  540
DDDDDGLLND FQVDSGTLPC VACGVLGFPF MSVVQPSEEA LKDLSERQGE IDAQEVTTLL  600
SEKSQCEWKT SSRYIRPRIF CLEHTIELQR LVQSRGGLKF LIICHKDFQK FKAHAAIVAE  660
EVKVPFSYDD VLLESASQEE LSLIDLAIED EKNYNHALDW TSELGINLRY CVKVRKNSPT  720
KKIQHALSLG GLFSDASYML DISSIRWLQR KTRSKAKPSS TSSFTPREHL EVKVDGKLGE  780
SVDSQAGRKE EKIIQYSRKK KSNPKLSAEQ GQELAPLAKS KDFDKTCNTN ASKSHLDSAI  840
RSELNNEIGD TGRVIGRNEK SFSKSPCSSS FTGALDQEHP EITIKFGSAL DGNVTNRFSM  900
VNGDSADLSS VSREHRGHSM TSNNNGSNSG SHVVASQTIL VSTGDNHDGP GKLSGDYVCS  960
DVSVRGVQEA VEMSDQEFGE PRSTVTNIED EQQSQKLQPT KREAVSGDHA QVERAEVIIR  1020
HTEHSSAQVG TEIPEINTAS ENMVFNMTHD GEPLESSAIL SSSNGDQASS NGLKVPDDEL  1080
NMESEVSSSG NTKVIETPNP MGEAKMKWKI KSESETNDNL ESSIGFIRSP CEGLRSRGKR  1140
KATCETSFKL TETSEEEKKF IAKRLKKTPK ARSGSRNQEV PTTTHPNRCY VEGCKMTFES  1200
KAKLQTHKRN RCTHEGCGKK FRAHKYLVLH QRVHNDERPF ECSWEGCLMT FKWQWARTEH  1260
LRLHTGERPY KCKVEECGLS FRFVSDYSRH RRKTGHYVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igo_A2e-371639616344Os05g0196500 protein
4igp_A2e-371639616344Os05g0196500 protein
4igq_A2e-371639616344Os05g0196500 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6645000.0AY664500.1 Arabidopsis thaliana early flowering 6 (ELF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452318.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLD7LXG80.0D7LXG8_ARALL; Putative uncharacterized protein
STRINGAT5G04240.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein